Peak calling by Sparse Enrichment Analysis for CUT&RUN (SEACR)
Target data bedgraph file in UCSC bedgraph format that omits
regions containing 0 signal.
Control (IgG) data bedgraph file to generate an empirical threshold for peak calling.
or
A numeric threshold
n between 0 and 1 returns the top n fraction of peaks based on total signal within
peaks.
“norm” denotes normalization of control to target data, “non” skips this
behavior. "norm" is recommended unless
experimental and control data are already rigorously normalized to each other (e.g. via
spike-in).
“relaxed” uses a total signal threshold between the knee and peak of the
total signal curve, and corresponds to the
“relaxed” mode described in the text, whereas “stringent” uses the peak of the curve, and
corresponds to “stringent”
mode.
Generated output file(s) will begin with the prefix you specify.
Global Progress:
Target data file progress:
Control file progress:
Task status:
Output console:
Error!
SEACR encountered an error, see console for details.
